rs33761389 SNP Detail

Summary

• ID
  rs33761389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74545524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCC CAGCCCAGGG ATTGACCCAG
  Y
  ACTGCACAGA CTGGGGGAGG GAGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45317575	mCV23154652	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss146763756	ENSMUSSNP6309550	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320348123	CHEV_2_74553237	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33761389					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74545524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11802	CpG island 11802	within coordinates
Cpgi11803	CpG island 11803	666 bp proximal
Hoxd3	homeobox D3	within coordinates
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr44608	regulatory region 44608	477 bp proximal
Rr44609	regulatory region 44609	1077 bp proximal
Rr57045	regulatory region 57045	within coordinates
Tssr533	transcription start site region 533	793 bp downstream
Tssr534	transcription start site region 534	822 bp downstream
Tssr18437	transcription start site region 18437	1808 bp upstream
Tssr24624	transcription start site region 24624	884 bp upstream
Tssr24625	transcription start site region 24625	809 bp downstream
Tssr24626	transcription start site region 24626	840 bp downstream
Tssr24627	transcription start site region 24627	944 bp downstream
Tssr24628	transcription start site region 24628	957 bp downstream