rs33762289 SNP Detail

Summary

• ID
  rs33762289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107180338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCCCTGG CACCCACTAG
  AGACCACCCA CCTCTGGCCC CCAACCCCTG GCACCCACTA GAGCCCGCCC ACCTCTGACC
  CCCGACCCCT GGCACCCACT AGAGCCCGCC CACCTCTGAC CCCCGACCCC TGGCACCCAC
  TAGAGCCCTA TGCTGCAGCT TAGAATGAGA TGCTTGAGCT GCCAAAACTT TGGCATTCCC
  Y
  GTGACACACC TTCCCTGTCT CCACCTTACC TACCTCCTGC CCGCTCTACT TGACTTTTGA
  CTTTTTCTTC TTAGAGTCAG GGCTAGAGCT TCAGGTGATT TTTTTTCTCA TTGTACTTTA
  TAATTTTACA TAGAATATGT AGAAAATCTA ATAATAACAT CAATATAACT ATGGCATTTG
  GCACAGCTTT ATAGGGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46853817	NES10719397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33762289					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46853817	NES10719397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107180338 () rs orientation: forward

Symbol	Name	Function Class
Rr582951	regulatory region 582951	747 bp proximal
Rr582952	regulatory region 582952	1001 bp proximal