rs33765809 SNP Detail

Summary

• ID
  rs33765809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4110089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAATATT GTTTATTCTG
  GGCTCTGCTC TGTTTCTCCT TTAGTTTCAG TCTATTTTAC AGTAAATGAA AACCAATCAG
  TACTACTGCT GTGCTTTGAA TTGATTACAA AAGGATTAGT GACATGGATT TTTTTTTCTT
  TCTGTGCTTC AAATAACTAT TCCTCTCAGA AGCCAGAAAA CAAATTTGTA GTAGAACTTA
  Y
  TGGAGTTTAT GACAAATGAT CAGACAAAGA GCAGAGTCTG AGTCCACAGC ACAAACTTCA
  GACCTGCACT GAAGTAGAAT TTCTTTCCTA CTTTCACTTT AGAAGCATTT ACCTAAAAAG
  AAAATAGAAC ACTATTTTTG GGGTTAATTA TAATTTAACA AAGCAACTCT AAATCCTTGC
  TCCATGATCC CATTCATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47339181	NES11380256	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C		C	T	C	C		T
ss324212509	CHEV_13_4059335	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33765809					SNP	T	T	T	T	T	C	T	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47339181	NES11380256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4110089 () rs orientation: forward

Symbol	Name	Function Class
Akr1c14	aldo-keto reductase family 1, member C14	within coordinates
Rr474440	regulatory region 474440	1685 bp distal
Rr474441	regulatory region 474441	488 bp distal
Tssr118214	transcription start site region 118214	503 bp downstream
Tssr118215	transcription start site region 118215	489 bp downstream
Tssr118216	transcription start site region 118216	417 bp downstream