rs33766728 SNP Detail

Summary

• ID
  rs33766728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4111276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTAAGAT GAATCAGATC
  CAGGTAGTAT TTAAAGCAGA CTCATTTTTG TTTTACTTTC CACAAGTCAA ATTTCTTAAA
  GTTATGGAAC ATACATGTAA ATTAGGCATA TAGAACAATA TCTAAGTACT GAATTTTTAC
  TTTGAACTGA AAACAACAAT TTCAACAACA AAAAGCGATG GTGAAGTTAA AACTGCCTCA
  Y
  CAAACCCAAG AGTATTAGAG ACAATTTTAT CCAGTAAGAT AATGTGTGCT TTATTCCTAA
  GATGTTTTCT CTCACAATAG AACCAGAACA AATATTTATG TAAATAGGTA TTTCCTTATG
  ACATTTGCCA GTTCATGTAA ACCTACTAGT AATTCACAGC ATTATTATTT CCTTTTATTT
  GTATTAAATA CATTTTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47339190	NES11380156	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	T	C		C
ss324212514	CHEV_13_4060522	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33766728					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47339190	NES11380156	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4111276 () rs orientation: forward

Symbol	Name	Function Class
Akr1c14	aldo-keto reductase family 1, member C14	within coordinates
Rr474441	regulatory region 474441	1675 bp distal
Tssr118214	transcription start site region 118214	1690 bp downstream
Tssr118215	transcription start site region 118215	1676 bp downstream
Tssr118216	transcription start site region 118216	1604 bp downstream