rs33766960 SNP Detail

Summary

• ID
  rs33766960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106341214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAT ATTCTCAGCG ACCAGAAAGC
  Y
  GTGCAGTAAT ACTAGTGTTG GGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46316359	mCV25135266	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss136936746	ENSMUSSNP4730450	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323185273	CHEV_9_106366346	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33766960					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106341214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	1369 bp distal
Cpgi22268	CpG island 22268	471 bp proximal
Gpr62	G protein-coupled receptor 62	within coordinates
Pcbp4	poly(rC) binding protein 4	3 bp downstream
Tssr86915	transcription start site region 86915	811 bp downstream
Tssr86916	transcription start site region 86916	743 bp downstream
Tssr86917	transcription start site region 86917	603 bp downstream
Tssr86918	transcription start site region 86918	464 bp downstream
Tssr86919	transcription start site region 86919	199 bp downstream
Tssr91318	transcription start site region 91318	870 bp downstream
Tssr91319	transcription start site region 91319	887 bp downstream
Tssr91320	transcription start site region 91320	1272 bp downstream
Tssr91321	transcription start site region 91321	1950 bp downstream