rs33768936 SNP Detail

Summary

• ID
  rs33768936
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25783039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGTTGAA TATCCAAACT
  GACTGGGAGA GTCGGTAAAG ATAGGGAGTG CCCGGAGGAC ACACAGTTAC TGATAGCCAG
  GATGGACATG AACTTGACCA AATAGATACC AGCTCCCAAG AGCTGATACT ACACCAAGAA
  GATCAGTAGG GAATGGAGGG GGCTTTTTCC AGTCTCTCGG ATGCTGGGGC AGACAAGACC
  R
  TTACTCCCTT TCTGTTGAAC AGAGGTTAGC TCTGACCTCC ACTGAGGTCA GAGCTAACAT
  TGTATTAGGT CAAGAAATGA AGAGGAGGGA CTTTCTGCCA ACTTGCCCCT GGGATGGGCT
  AACAGGATGG GTGCTCTCTG AGAGAACAGG ACTCTAAAGC TTGGACTCAG GGCGAAGCTG
  GCCAGGGAAC TACTTTTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48354782	NES12234763	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33768936					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354782	NES12234763	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25783039 () rs orientation: forward

Symbol	Name	Function Class
Rr523604	regulatory region 523604	473 bp proximal
Rr523605	regulatory region 523605	1137 bp proximal
Sox8	SRY (sex determining region Y)-box 8	1826 bp downstream
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr146844	transcription start site region 146844	1952 bp downstream