rs33769652 SNP Detail

Summary

• ID
  rs33769652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107342546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCTCCTA AGTTTTATTC
  CGTTTTGATG CTGTCCAGGC TTGGACCCAT AGAGCAGTAC AGTTGGGCCT GAATCTCAGC
  TTCACCTCTT TCAGGACTGT GACTTTGAAA GTATGAACTT ACATGTCACG CTGCATTTTT
  TTCTCTGTGG AGCAAACTGT TACACCAGTC TCAGAATGCC CTTCCATGAG CACTGCACAC
  R
  TCTCAGGCGA AACGCATGCG TGCTGTTTGT AAATTATTCC CCTAACCCCT TGGTTAAAAG
  AACAGGGCCT CGGGCTGGAG AGATGGCTCA GCGGTTAAGA GTGGTAAAGA TGACTGCTCT
  TCCAGAGGTC CTGAGTTCAA TTCCCAGCAA CCACGGGGTG GCTCACAACC CTCTGTAATA
  GGATCCAATA CCTTCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855542	NES10711004	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	G	A	G	G	A
ss135583984	ENSMUSSNP4613898	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33769652					SNP	G	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855542	NES10711004	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107342546 () rs orientation: forward

Symbol	Name	Function Class
Rr582971	regulatory region 582971	1136 bp distal
Rr582972	regulatory region 582972	1105 bp distal
Rr582973	regulatory region 582973	1235 bp proximal