rs33769843 SNP Detail

Summary

• ID
  rs33769843
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72712584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTCAACTT GGCACAAGCT AGAGTCATTT GGGAGAGGGA AACTTAATTG GATAAATGTT
  CCCGTCATAC TTGAATGTGG GCAAGCCTGT GGTTCATGCT CTTGACTAAG GATTGATGCA
  GTGTCTCTGT GGGCGGTGCT ACTTGTGGGT TTGGTGGTCC TGGATGCTGT ATTAAACAAA
  CAAACCACAC ACACACACAC ACACACACAC TCAGACACAC ACACTCAGAC ACACATACTC
  ACACACACTC TCACACTCAC ACACACTCGC ACGCACACAC ACTCACACAT ACACACACAC
  W
  CACACATACA CACACACACA CACACACACA CACACACACA CACACACACA CACACATTCT
  CTCTGACCAG CCAGGAAATG GTACTCCTCA ATGATCTCTC CTTCCTGCCT CCAGGTTCCT
  GCTCTGACTT CCCTCAGTGA TGGATTGTTG GCTGTGAGAT AAAATAAACT CTTTGCTCCC
  AACTTCTCTA TTAACCTCAC AGGTTCATCA TGGGAGGCCA AGGAGTACAT ATGAAAACTT
  TTGAGCAGAC CACAAATGTT ATACATGGTC AGAGGAAGTC TCTTCCTGTC CAGTGTAGTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss46317606	mCV23625694	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs33769843					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72712584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22020	CpG island 22020	1431 bp proximal
Prtg	protogenin	1972 bp upstream
Rr206710	regulatory region 206710	816 bp proximal
Tssr86048	transcription start site region 86048	1830 bp upstream
Tssr86049	transcription start site region 86049	1857 bp upstream
Tssr86050	transcription start site region 86050	1891 bp upstream
Tssr86051	transcription start site region 86051	1920 bp upstream
Tssr86052	transcription start site region 86052	1999 bp upstream