rs33770172 SNP Detail

Summary

• ID
  rs33770172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4296393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTCTT TTTCTCTCTC
  TCTACCTTCA TCCTTCTCCC TTCCCCCTTC CATTTTCCTT CCCTCTCTTC CTACCTTCCT
  CTGTTCCATT TATATATCCC TATTTTTAGA GAAAAAAATT AATAAAATTT ATTTTATTTT
  TATGGAAAAT ATCCTCTACA AGTCAAATCC TTTGTTCTTT GGAATTGATA AAATTAATAC
  Y
  TTCCTAATTC TTGGATTAAA TTGTGTTGTA AAGAAAATTG TTAATATTTT GACAGTTCAT
  TATGTGGGAT ATAGAAAGCT ACTTATATTC ACATACATAT TTTAATTATA TGGTTTGGAA
  ATTTATTTTG GCTTGCTTGG AAACAATCTC TATGGTCTTT GAATAAAATC AAACTTGTAT
  CTGCTGCAGG TCATTTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47340732	NES11382119	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		T	C	T	T		C
ss324213484	CHEV_13_4245640	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33770172					SNP	C	C	C	C	C	C	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47340732	NES11382119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4296393 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	within coordinates
Gm61344	predicted gene, 61344	within coordinates
Rr474456	regulatory region 474456	536 bp distal