rs33770645 SNP Detail

Summary

• ID
  rs33770645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107374997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTTCAC CCCATCCCAA
  AGCCTCCCTC AGCTCCCCTC CTGTAAGTGA AGAAAGGCAA GAGAGGGTGC TAAGAACAGA
  CACTTTATTG TACAGCAGGG TGGGGGAGAT GAAGTGGGGG CCCTGGGGTG ACAATGCCTC
  ATGCCCTCTC CTGGGCCAAG TGATCCTGAC TCAGAGCACT GGCCACTCCA GGACACATGA
  R
  CTTAAACTGT TCTGAACGTG TGTCAGGACC GGAAGTGACT GCCTGGTATG TGTTTAGGTC
  TGTACAAAGC AGGACTTCTC ATGAGAAATG ACCCGGGGCC CTCCTCCCCT AGCTCCCCAT
  AGTTCAGACC TAAGAAGAGG GACTCAGAGG TGTACAGAGT CAGGTGTATT ACAGCCTGCG
  TGATCTCACT TCTCTTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855923	NES10710082	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33770645					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855923	NES10710082	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107374997 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	1939 bp proximal
Rr582980	regulatory region 582980	729 bp distal
Rr582981	regulatory region 582981	894 bp distal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates