rs33770714 SNP Detail

Summary

• ID
  rs33770714
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107342880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAATTC CCAGCAACCA
  CGGGGTGGCT CACAACCCTC TGTAATAGGA TCCAATACCT TCTTCTGGTG TGTCTGAAGA
  CAGCTGCAGT GTACTCATAT ACATTAAATA AATAAATAAA TAAATAAATA AATAAATCTT
  TTAAGAAAAA AGGACAGGGT CCTGCTGGGA GGAGGTTAAC TCACAACACT TCTTTTGAAA
  Y
  GTGAAGGCAT TAAACCAAAC TGCTGCTGTT GGTGGAGGTT TCTCCATGGC ACCCTCCTAT
  CCATATGTGT TTAAATGCAA TGGTTTTTAA CTCTTTTTTT GTTTGTTTGT TTTTGGTTTT
  TTGTTGTTGT GTTTTTGAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC TGGAACTCAC
  TCTGTAGACC AGGCTGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855545	NES10710980	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	T	C	C	T
ss135584002	ENSMUSSNP1247736	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33770714					SNP	C	C	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855545	NES10710980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107342880 () rs orientation: forward

Symbol	Name	Function Class
Rr582971	regulatory region 582971	1470 bp distal
Rr582972	regulatory region 582972	1439 bp distal
Rr582973	regulatory region 582973	901 bp proximal