rs33770793 SNP Detail

Summary

• ID
  rs33770793
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124194438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGAACTTGGC CCCGCCCACC TACACCATGC CTCCGCCTCC CGGTTAATTT GCATATTCTA
  GAGTGGAGAA AGCACAGAGC ATGGGGGGGG TGGTGGCGAG GGGGGTGGGA GAAGAGCATA
  TGCAAAACTT CAATGAATAT GCAAATGATA CGCGATCCGT TCGCCGTTCG GAGGGCGGGG
  CCCTCATTTG CATATTTATG AGAGGAACCG AATGCTGTGG TGTAATTATT GCTTCGGCCG
  GTCCGGTCCG AGCCGGTCCG GTCCGAGCCG AGGCCGCCCA GTCCGCTCGG AGCTGAAAAC
  S
  GGAACCCGGT GGTGGTGGGG GAGGGGCGAG AGGAAGGGGG AGGGATATAG GCGACGGGGG
  CGGGGCGATA GGGCAGGGCC AACGCAATAA ATGGACGAGG TGACGTCACC AACACGGGCG
  TGTCCCGGCT TCCGCTTCCG GTCAATCACC CGGATTGGGG CGCCGTATAG GGGCGCGACC
  ACATTGACAT CACCGCTTTC TTCCTGCCAG GGTGGGCGTG GCCACCGTCC TCCGCTGTTT
  GTCAGTCATT AGCACTTGCG GTTATTCCCC TGCCTCACCT CTGTCAGTCC GGGACGCGGG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46317616	mCV24427001	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss134041061	ENSMUSSNP6924606	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33770793					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124194438 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	687 bp downstream
Gm20783	predicted gene, 20783	1917 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	974 bp upstream
Rr689518	regulatory region 689518	517 bp distal
Rr689519	regulatory region 689519	484 bp proximal
Rr689520	regulatory region 689520	1352 bp proximal
Rr689521	regulatory region 689521	1468 bp proximal
Tssr3095	transcription start site region 3095	1980 bp upstream
Tssr3096	transcription start site region 3096	1900 bp upstream
Tssr3097	transcription start site region 3097	1824 bp upstream
Tssr3098	transcription start site region 3098	1473 bp upstream
Tssr3099	transcription start site region 3099	1370 bp upstream
Tssr3100	transcription start site region 3100	1345 bp upstream
Tssr3101	transcription start site region 3101	1233 bp upstream
Tssr3102	transcription start site region 3102	1090 bp upstream
Tssr3103	transcription start site region 3103	1048 bp upstream
Tssr3104	transcription start site region 3104	956 bp upstream
Tssr3105	transcription start site region 3105	846 bp upstream