rs33770893 SNP Detail

Summary

• ID
  rs33770893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTAAC CCTGCCCCTC
  ACTGCTAAGT GACTCCACAG ACAACTTCCC GAAAAGGCTG GCCATACTCC ATAAAGCCCT
  GCATATTCGG GCAGAGAATT CTAGTACCTA GGGCAAAACA GGACAAGTGG GAAGGTCACT
  TCCACCCTCT TGGGTAGTAG ACAACCCTGT CCACAGGCCT GAGAGTTCAA GGCCTGAGGA
  R
  CTGAGGTAGA GTATGGGAAT AATTTTTGCC TAGAGTATCC TATCAAGTTA CTCTGCTAAA
  AGCCAAATGC CTGTGAGGGA GGCAGACAGT CACAGGCAAG ACAGGTTTGT TTCAAGAGAC
  AGCCCCAGTG AAGACGGTGT CTGGAAACCA TAAGCTCGCC CTAGGGACAA ATGTCTCAAC
  TTGTGTACAG GACAGATGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46317708	mCV23332167	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss137081831	ENSMUSSNP7202692	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33770893					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622585 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	1454 bp upstream
Tssr92158	transcription start site region 92158	1448 bp upstream
Tssr92159	transcription start site region 92159	1424 bp upstream
Tssr92160	transcription start site region 92160	1049 bp upstream
Tssr92161	transcription start site region 92161	1028 bp upstream
Tssr92162	transcription start site region 92162	1305 bp downstream