rs33771187 SNP Detail

Summary

• ID
  rs33771187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGCCGA CAGTTGCGCT GCCGACTGCC GCCTCTCCCA
  GGCCCTCTGC CACGGAAATG CTTCTGAGGA GACTTTTCCG GGTCCAGAAA CAGCTAGGAC
  R
  CAGAAACCGA AAGGTAGAAA GTTGATTGGT GGAAGTCCCT GTCATTCCGG CCTGGATCTT
  AGGAGCTGTT CTCCTAGACC CGCCCACTAA ACCATACTTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48354565	NES12250046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33771187					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354565	NES12250046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533854 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	36 bp upstream
Gm53992	predicted gene, 53992	49 bp upstream
Rr523017	regulatory region 523017	47 bp distal
Rr523018	regulatory region 523018	within coordinates
Tssr146602	transcription start site region 146602	64 bp upstream
Tssr146603	transcription start site region 146603	27 bp upstream