rs33771190 SNP Detail

Summary

• ID
  rs33771190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22533738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATATTCCA CTAATTGTAA
  AATACATTTT TAAAGAATCA CGATAAATCC CAGGTCACAG GATCTGAAAC TTCCGGTCAG
  TGGTAAGAAA CCAATGACAG AACTGTGAGA GCGGCGTCCT TAAGAGCAGC TGCGTAAAAC
  ACCCCGCTGC TCCGCTCCCT CCCGTTTCCC AGCCCCGCAG CTCCTCTAAC CTGGGACCTT
  Y
  CGGGGCCGCC GGGCTGCTGT GCCGACAGTT GCGCTGCCGA CTGCCGCCTC TCCCAGGCCC
  TCTGCCACGG AAATGCTTCT GAGGAGACTT TTCCGGGTCC AGAAACAGCT AGGACGCAGA
  AACCGAAAGG TAGAAAGTTG ATTGGTGGAA GTCCCTGTCA TTCCGGCCTG GATCTTAGGA
  GCTGTTCTCC TAGACCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss48354568	NES12250043	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T
ss145304099	ENSMUSSNP6713907	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33771190					SNP	?	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354568	NES12250043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22533738 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	165 bp upstream
Rr392409	regulatory region 392409	1944 bp downstream
Rr523017	regulatory region 523017	within coordinates
Rr523018	regulatory region 523018	70 bp proximal
Tssr146602	transcription start site region 146602	37 bp downstream
Tssr146603	transcription start site region 146603	57 bp downstream