rs33771901 SNP Detail

Summary

• ID
  rs33771901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107345008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCCTGTC CTGACTTCCT
  TTGGTGATGA ACAGCAATGT GGACGTGTAA GCTGAATAAA CTTTTTTCTC CCCAACTTGC
  TTCTTGGTCA TGATGTTTTG TGCAGGAATA GAAACCCTGG CTAAGACAAC CACGATGACA
  GTAGAGCCCT AAACCCAGCA TGGGGCCCTT CTGAGAGGCT GCAGGCCCGT ATATCCATAA
  R
  CCAGCTTTGG GTATGCTCCT ATGTGGGGGT GAAAGGAATA GAGAGAGTCA CCAGTGTACC
  AGAACTTGGC ATTTTCCTAG CCCGTGTACC CAAAGTATGT TCACTCTCCA TCCCCAAGAG
  GCTCATGGTT GTGCCACCAG TCTTGGGTTG GCTTCAGTCC ATCAGCTATC ATGCAGTCAT
  TGCAATGGCT GGCCTCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855566	NES10710828	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33771901					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855566	NES10710828	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107345008 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	611 bp downstream
Rr582973	regulatory region 582973	925 bp distal
Rr582974	regulatory region 582974	1775 bp proximal