rs33772047 SNP Detail

Summary

• ID
  rs33772047
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:22532923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAACATAA GCACTCAGCA TATGAAGACA TATTTCTGAA
  TGTTTTACTT ACATCCTAAA CTGCATACAA CTCTGATTAA AAAGTTCATG GCCACTAAAA
  M
  GTCTGCTTAG TAAATATTAG TGTTTACACC CACGACAGTA GGGCTCGATA AAGTATATTT
  TTTGGTTCAA TAAATTGGCA CTGGTTCCTC ATATAATATT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48354575	NES12250138	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33772047					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48354575	NES12250138	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:22532923 () rs orientation: forward

Symbol	Name	Function Class
Gm7072	predicted gene 7072	within coordinates
Gm53992	predicted gene, 53992	980 bp upstream
Rr392409	regulatory region 392409	1129 bp downstream
Rr523017	regulatory region 523017	318 bp proximal
Rr523018	regulatory region 523018	885 bp proximal
Tssr146602	transcription start site region 146602	852 bp downstream
Tssr146603	transcription start site region 146603	872 bp downstream