rs33772078 SNP Detail

Summary

• ID
  rs33772078
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170673706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATGCCAGA GGGGGCTGAG GGAACTCTGA GGGGCAGGGG
  AACACTAAGG AAGAAGCCTG GCTGTTCGGC TGTACCCCCT GCTGGGTCCT GCTCCTGCTG
  Y
  TGATGGTTGA GAGGAAAGAG ACCAGAAGAA GCTGGACTTC CCGGTAGCGG AAGATTAGAC
  TTGCTTTAGT CAGCAGGAAG TAGTTTAAAG AGACCTAGCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss49528614	NES12814944	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs33772078					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49528614	NES12814944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170673706 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	1458 bp distal
Rr423132	regulatory region 423132	1555 bp distal
Rr423133	regulatory region 423133	within coordinates
Tssr14928	transcription start site region 14928	337 bp upstream