rs33772079 SNP Detail

Summary

• ID
  rs33772079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170673379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGTGGC ATTCCTGCCA
  TAGACACTAA AGCTGACTCC AATCCTGAGG AAACGTCTGG CACTCCAAAT GATAAGGTCA
  TTAAAGCACG AAGTCAAGAA GGAAGAATTG TTCCAGAATA AAGAAAATTA AAGCAGAAAG
  ACAACCACAT GCAACATAAC CTGATGCTTT TGCTGGTCTG AATCTAAGGG GAGCTACATG
  K
  GAAATTGCAC AATCTAAACC GGGACTGGGT AGTGCGAGTT TTGGTTTCTT TTAACCTCAG
  TTATGCTACG GAGACATGTT TCTGTTTTAA TCCCTGGTGT GGCCTCCTTC AGCTTATCCA
  CAGCAGCAGA CTGACTGCCT CGTGCTCCAG CAGGGGCAGG ATCTGTGCCC AGTGCAGATA
  GCTTAATTCT GGGAACTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49528616	NES12814966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33772079					SNP	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49528616	NES12814966	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170673379 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	1131 bp distal
Rr423132	regulatory region 423132	1228 bp distal
Rr423133	regulatory region 423133	within coordinates
Tssr14928	transcription start site region 14928	10 bp upstream