rs33772081 SNP Detail

Summary

• ID
  rs33772081
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170672409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGGGAAA CAGTAAGTCA
  ACACTAATGT TAACAAGTAT CTGGGTGATG GATAGCTTGA CAAAGACCCG CACATTCGGG
  CAGGAGAACA GATTAGCGAG TAAAGGCACT GAGTTCAACC CCCGGAACCC ATGTGGTAGA
  AAGAGTCTGA CTTTCACACA CTCACTGTGA GCCATCATGA ACAACCATAC ATAAGACACA
  M
  AAAATAAAAA AGTAAATGTT CATTTTTTTT TTTATTTTTT TATTTTTGGT TTTTCGAGAC
  AGGGTTTCCC TGTATAGCCC TGGCTGTCCT GGAACTCACT TTGTAGACCA GGCTGGCCTC
  AAACTCAGAA ATCTGCCTGC CTCTGCCTCC CGAGTGCTGG GATTAAAGGC GTGCGCCACC
  ACGCCCAGCT TATTATTTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss49528618	NES12814999	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33772081					SNP	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49528618	NES12814999	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170672409 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	161 bp distal
Rr423132	regulatory region 423132	258 bp distal
Rr423133	regulatory region 423133	577 bp proximal
Tssr14928	transcription start site region 14928	947 bp downstream