rs33772082 SNP Detail

Summary

• ID
  rs33772082
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170672030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTCAAA TCACATACTA
  AGGCAATTTT AAATGGATCT GAGGTCATCT TTACCTTATG AAAAACTTGT GTTAACACTC
  ACTTAGAAAA TATTCTTTCC TGAATAATTT AAGCATCAGG CATTAGATGG GGCTGCAAGA
  GCACCCTCCA TGCCCGGGGG ACTTGTCAGG GTACCAGAAG TGTTGGGAAC ACATTCACAA
  S
  GGGACCCACG GACCTAAGAA GGCAAGGCAA GGAAGGAGAG CCTTCATGTA ACATGGCTGA
  GCCCAACAGA AGCCTAGTGA AAGATCACAG GAGCCATAGA CAGCGACTCC TGGTGGCTAA
  ATACGAGACA ACACAAACAC CAGAATAAAT AATCACAGCA ATGGTTACAG TCTAAACCCA
  ATGGGAAACA GTAAGTCAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49528619	NES12815038	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33772082					SNP	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49528619	NES12815038	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170672030 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	within coordinates
Rr423132	regulatory region 423132	100 bp proximal
Rr423133	regulatory region 423133	956 bp proximal
Tssr14928	transcription start site region 14928	1326 bp downstream