rs33772135 SNP Detail

Summary

• ID
  rs33772135
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4296748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTGAAT AAAATCAAAC
  TTGTATCTGC TGCAGGTCAT TTTATCTATA TTGTTCTGCC TCAACATATG TGAAAAATTA
  TTTCCTTGAA CTTTTATCTG ACATCCATTG ACCACTTGAG TATCTTTCTT TATATCGTTC
  ATATTTTTGA CCTTTTGTAT ATTAAAAATT GCCTTTCAGA ATAAAACGTG ATTCACTTGG
  S
  TTTTAAGATT TGCAAGTGTG CAGTGTCCTA AAGTGTTTCT AATTTTTCAA TAGGTATTTG
  AATTTGAGCT GCCTTCAGAG GATATGAAAA TCCTAGATAG CCTGGACAGA AATTTAAGAT
  ATGCACCTGC TCCATTGTAA GTCACTCTGA AAAATAGGCC ACAATTTATT TTAATTTATG
  TCTTTTCCTT TTCAGTGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47340747	NES11382130	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G		G	C	G	G		C
ss324213488	CHEV_13_4245995	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33772135					SNP	C	C	C	C	C	C	C	C	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47340747	NES11382130	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4296748 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	within coordinates
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	1986 bp upstream
Rr281305	regulatory region 281305	948 bp distal
Rr283538	regulatory region 283538	348 bp distal
Rr283540	regulatory region 283540	1853 bp proximal