rs33772634 SNP Detail

Summary

• ID
  rs33772634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107345322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAGGCT CATGGTTGTG
  CCACCAGTCT TGGGTTGGCT TCAGTCCATC AGCTATCATG CAGTCATTGC AATGGCTGGC
  CTCCCCAGGG CCTTGGCCCA TTTAGGCTGA TGCAGCTACA GGGAGAAGGA GGTTCCTATA
  CAAATAAACA GGTCCACAGT GGACTTCCCA AAACAAAGAA GACTTGTTTC ATGTTATGGT
  R
  GGTTCAGGTG GCAGTAGTGG GTGGTGAGGA CACTGTGGGG GACCCAGGGG TTTAGAGATC
  ATTTCTTTCC TGCAGATCAC TTTAGAGATT GCCTTGCTAG CTGTAAAATG TAGGAGCTGA
  GCCACAGGGA GGGTCCCTGG TGGGGACTCA ATTAGGCTCA GGTGTTCTTG CACTCCTTAG
  ACACAGGTGG TAGCTTCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855569	NES10710829	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33772634					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855569	NES10710829	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107345322 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	297 bp downstream
Rr582973	regulatory region 582973	1239 bp distal
Rr582974	regulatory region 582974	1461 bp proximal