rs33772895 SNP Detail

Summary

• ID
  rs33772895
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:170671664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAATGCG TTTTGAAATG
  TGCAGTTAGA TGCAACAGAG TTAATAGATA CAGAGTAACA GGAATTCATC TTTAAAAGTA
  AATGGGAGCC AGGCATGTGG AATACACCTA TAACCACACC ACTCAAGAAG CTGAAGCAGA
  GGTTCATGAG TTCAAGGTTA GCCTGAATTG CAAAGCAAAA CTCTGTCTCA AAACTCAAAT
  W
  TAAATCAATA ACAGCAAACC AATAATTAAT AATAATAATA CCATCTCTAT AAATTTAAAA
  TGCATACTTA TAAATGAAAT CAGAGAGGGG GACAAATAAA CTTTTAATAT ATGATATTGG
  AATAAACCTT TTAATAATAT TTTAGAGAAA CATAAAATTG AGCCTGTGTC TCAAATCACA
  TACTAAGGCA ATTTTAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49528623	NES12815034	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33772895					SNP	A	A	T	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49528623	NES12815034	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170671664 () rs orientation: forward

Symbol	Name	Function Class
Atf6	activating transcription factor 6	Intron
Rr423131	regulatory region 423131	356 bp proximal
Rr423132	regulatory region 423132	466 bp proximal
Rr423133	regulatory region 423133	1322 bp proximal
Tssr14928	transcription start site region 14928	1692 bp downstream