rs33773031 SNP Detail

Summary

• ID
  rs33773031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4297788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCTTTAT CTGAATGTAA
  CAGAATGTGT TGTATTTAAT AGGTAGTGTA TAAAAACAAA TGAGTTAGTT AAATGAAAAG
  AGATTAGTAC CTAAAAGCTG CATTATCCAC ATATCTTGTA ATAATGTTCA GACTCACACT
  GCACAGGATA TTCCCTTTAT GTTTTTCCTG ACTGACTGAA ATGTGACCCA ATCTTGCCTT
  Y
  TGTGCTTTGA CAGACTGACT GAAGAAGCCA AACGAAAGGA GCATTTTGTG AATGTCTAGC
  TCTCTAGATC ATTCTGATCT TGGCAAGGAA AATAATATGA AAAATTCAGT TATAATATTC
  TTAAAAGATT TCCTTCATAG TCGTTTATGA AAATAAAAAT AGCATATTCC ACAATTGAGC
  TAGAAAATGA AGTGGTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47340765	NES11382142	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		C	T	C		T
ss324213495	CHEV_13_4247035	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33773031					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47340765	NES11382142	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4297788 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	within coordinates
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	946 bp upstream
Rr281305	regulatory region 281305	1988 bp distal
Rr283538	regulatory region 283538	1388 bp distal
Rr283540	regulatory region 283540	813 bp proximal
Tssr118223	transcription start site region 118223	1916 bp upstream