rs33773321 SNP Detail

Summary

• ID
  rs33773321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG TCTTATAGTG CAGACTTGCC
  R
  TGTATTAAGG ATGGTCTTGA ACTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46318307	mCV25191862	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136454984	ENSMUSSNP4758761	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss322954392	CHEV_9_48304361	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33773321					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407556 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	within coordinates
Cpgi21716	CpG island 21716	236 bp distal
Gm5617	predicted gene 5617	284 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	957 bp upstream
Rr195326	regulatory region 195326	445 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	738 bp downstream
Tssr2862	transcription start site region 2862	358 bp upstream
Tssr84988	transcription start site region 84988	1199 bp downstream
Tssr84989	transcription start site region 84989	1141 bp downstream
Tssr84990	transcription start site region 84990	1036 bp downstream
Tssr84991	transcription start site region 84991	990 bp downstream
Tssr84992	transcription start site region 84992	856 bp downstream
Tssr84993	transcription start site region 84993	805 bp downstream
Tssr84994	transcription start site region 84994	346 bp downstream
Tssr89390	transcription start site region 89390	1848 bp upstream
Tssr89391	transcription start site region 89391	1829 bp upstream
Tssr89392	transcription start site region 89392	1799 bp upstream
Tssr89393	transcription start site region 89393	1267 bp upstream
Tssr89394	transcription start site region 89394	983 bp upstream
Tssr89395	transcription start site region 89395	938 bp upstream
Tssr89396	transcription start site region 89396	921 bp upstream