rs33773823 SNP Detail

Summary

• ID
  rs33773823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4298717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCATCTG GCCTGTGACA
  TATTGCATGT AGTCTATGGT TCTTAGTATG GAAGGTGAAG AGTTCTTGAC TGACCAGTGG
  TGCCTGGCTT CCCTTATAGC ATCTAAATAA CAGAGTTCTG GATTGGGGAG TGAGACATTA
  CTGAAACAGT ATGGGGCCAA AGAGGTGACA GGAGGGTTGA ACAAGGCCCT GATCTTTGGG
  Y
  ATAGTGATAT GTTGTTAAAT TGAGTGACCT GTCCTTCAAG AGAAATCGGA AGGAGGGTGG
  GGGTGATTCC TCAGCCTCCT CACCAACAGA GGAAGAGCAG GAGCAGAGGG AAATCAGTGC
  CTGCAGCGAT GAGGGCACTG CCCAAGAAGG GAAGGCTCCT GCCACCCCTG AGAGCCAAGA
  GCCCCAGTTC ACGGGTAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47340777	NES11382149	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	T	T		C
ss324213501	CHEV_13_4247964	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33773823					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47340777	NES11382149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4298717 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	357 bp downstream
Gm61344	predicted gene, 61344	within coordinates
Marcksl1-ps4	MARCKS-like 1, pseudogene 4	17 bp upstream
Rr283540	regulatory region 283540	within coordinates
Tssr118223	transcription start site region 118223	987 bp upstream