rs33774291 SNP Detail

Summary

• ID
  rs33774291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40693494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACAAACAT TTTCCTAAAC TGAGCATTAA GTCTTAGGAA
  ACCAGAAACT GCTCAGTTCC TTAACTGACT GCCTTGGAGG TTTATGGCTT GAGGAGTTTA
  Y
  TGGAAAAAAA AAAAAAAATC TCAGGAGGAA GTAACTTTAA CGAGCGTCAA CCCAGCCCCG
  GCAGTACTAA AGTTTATCTT TGCTATCTGT TCACTTTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46318229	mCV23403801	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136338119	ENSMUSSNP1807602	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33774291					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40693494 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	53 bp proximal
Gm16096	predicted gene 16096	within coordinates
Rr676920	regulatory region 676920	1190 bp proximal
Rr676921	regulatory region 676921	1914 bp proximal
Tssr84467	transcription start site region 84467	1833 bp downstream
Tssr84468	transcription start site region 84468	1108 bp downstream
Tssr84469	transcription start site region 84469	1021 bp downstream
Tssr84470	transcription start site region 84470	79 bp upstream
Tssr84471	transcription start site region 84471	206 bp upstream
Tssr88968	transcription start site region 88968	857 bp downstream
Tssr88969	transcription start site region 88969	1452 bp downstream
Tssr88970	transcription start site region 88970	1843 bp downstream
Tssr88971	transcription start site region 88971	1942 bp downstream