rs33775143 SNP Detail

Summary

• ID
  rs33775143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108889319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC ACGAAGGCTA GGACAGTGTC
  R
  TGCTAGCTTA CCTTCACAGT CAGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46317762	mCV23599043	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss61451629	NES16833323	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G	A	G	A		G	A	A	G		A
ss136953554	ENSMUSSNP1588361	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss323192977	CHEV_9_108962765	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33775143					SNP	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451629	NES16833323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108889319 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	within coordinates
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	331 bp downstream
Rr686957	regulatory region 686957	27 bp distal
Rr686958	regulatory region 686958	568 bp distal
Rr686959	regulatory region 686959	422 bp distal
Trex1	three prime repair exonuclease 1	528 bp upstream
Tssr91572	transcription start site region 91572	1980 bp upstream
Tssr91573	transcription start site region 91573	1846 bp upstream
Tssr91574	transcription start site region 91574	1613 bp upstream
Tssr91575	transcription start site region 91575	1566 bp upstream
Tssr91576	transcription start site region 91576	1480 bp upstream
Tssr91577	transcription start site region 91577	992 bp upstream
Tssr91578	transcription start site region 91578	545 bp upstream
Tssr91579	transcription start site region 91579	480 bp upstream