rs33775172 SNP Detail

Summary

• ID
  rs33775172
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACTGAAATT GAATTCACCA ACATCTGCCC
  TAGGCTTTCA GACCTGGGGT CATGGCCCTG GACCACAGCC AGAAGGCAGG TCTTTTTGAG
  GCCCTTAGGT CCCTGGGGTC CATAGTAGCT TGCTTACTAC TGTACTGTGT GGTATGCCCT
  W
  GGGAAGTGGC CTCCCAGGGC CTGGCCATCC TGGGGTAGCC CTAGGATGGA TAGACCCGTG
  AGCACCAGAG CCAAGGAACT TCACCCCTGA ACCCTGTGTT GTCAAAGCTG GCCCCACTGA
  CATCCTTCAC TCACCTTCAG GGTCTTCTCC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48356203	NES12249605	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A		T	T	T	T		T
ss325336432	CHEV_17_25298177	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33775172					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356203	NES12249605	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380206 () rs orientation: forward

Symbol	Name	Function Class
Ccdc154	coiled-coil domain containing 154	1229 bp upstream
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	656 bp downstream
Tssr143140	transcription start site region 143140	1533 bp downstream
Tssr143141	transcription start site region 143141	1209 bp upstream