rs33775736 SNP Detail

Summary

• ID
  rs33775736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107353742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCTGG CATTGGCCAC
  TCAAAGTCCC AGTGTGGCCA GTTAAACGGG ACAAGGGCCT CCATGCTGTG CATGTCTAGA
  AGGCTACCTA CGGCCCTCTG GATTTGTTCA TAAGGATCTG CTCTGAGCTC TGACTGGACC
  TCAAAACACA TCTTAGATTC CTATCAGGCT CAGGAAGGGG CACCATTGTA GTAGTGCAAA
  Y
  GGACGGAAGC TTCTCTACCA AGGCCTTCAT CAAGGAAGAC CCAGACCCTA GTTAATCCCA
  GAGAGCAACT AACCCCAACA CAGGCAAGGT CACAGGTAAG TGTCAATTCA GGCCCCTCTC
  TGGAGAACTA GTCCCACTTT GAGAGTTTAA CCAGGAGCTG CTGCCTCAGT CTCAGCTCTA
  CTGAGCCCAG CCTCAGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46855686	NES10710870	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33775736					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855686	NES10710870	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107353742 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	474 bp proximal