rs33776551 SNP Detail

Summary

• ID
  rs33776551
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107354429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCAGGA CTCACTCCAG
  CTATACTGAA CAGAAGGCAG CCTCCCACTG CTGTTACGTT ATCACAGCTA TTAGGCCAAG
  AGAGAGCAGA CGTGAATGTT GGGAAAGAGG TGACTCATGT GTCAATGCAC CTTGGAGGAA
  CAGCTGCCCT GCTCTCTGCC TAATCATATC AGCACTGGCA TGTGTTCTAC TTTTTCAAAG
  Y
  GTGGCAGAGC CACCACCCAT TTGGGTTTCA TCAGAGTAGG GTAGGATATT GATATGTCAT
  TCCCATTAAT AGGTTCTGCC CAGAGGGGAA GGAACTGGCT TCTGGGAACA AAGCAAGGCG
  GGCAAGAAGG GACTAGAAAC CAGTCTTTCT AACATACAGC CTCCAAGTAC TGTCCGCATA
  TCCTACACTG GAAGGATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss46855701	NES10710876	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	C	C
ss135584098	ENSMUSSNP237452	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs33776551					SNP	T	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855701	NES10710876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107354429 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	within coordinates