rs33777257 SNP Detail

Summary

• ID
  rs33777257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25402141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTCACCT TCAGGATGAC AGAGTGTGCT TCCCCAGGTG
  GGAGACCTTG AGCAAAGAGC GGGCAAAACC ACCTGCAGGG AACAAGGCAA GTGAGTTTGC
  W
  GGCTGCTCCC AAATCCTGCA GTTGCAACAG GTGTAAATTT CCCCCCCAAG CTTCTGGATC
  CAATTGATAT CAGACCCCTA TTTCCCTGCA TGGGGAGAAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss48356119	NES12248641	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs33777257					SNP	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356119	NES12248641	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25402141 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	446 bp downstream
Cpgi8755	CpG island 8755	836 bp proximal
Rr370183	regulatory region 370183	1173 bp upstream
Rr523507	regulatory region 523507	133 bp proximal
Rr523508	regulatory region 523508	240 bp proximal
Rr523509	regulatory region 523509	897 bp proximal
Tssr5037	transcription start site region 5037	1391 bp upstream
Tssr143142	transcription start site region 143142	1397 bp upstream
Tssr143143	transcription start site region 143143	1443 bp upstream
Tssr146818	transcription start site region 146818	1215 bp downstream
Tssr146819	transcription start site region 146819	1237 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	1394 bp upstream