rs33777258 SNP Detail

Summary

• ID
  rs33777258
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25401480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCTGATC TGAGACAGTC ACTGAGACTG AGATGGGCTC
  ATTGGTCATT GTCAGAGGCT AGCCCACCCA AGGATGAAAC TCTTAACTCT TGCTGTACCT
  M
  CTTGTCTGGT CCCATGGGCT ATCCTGTGCA GCTTGAGCCT GGCTCTCCTA CAGTATCCAA
  TCCAGGAAGC CTGATTCCCG TTACACCTTA GGGCCCTTAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48356121	NES12248635	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33777258					SNP	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356121	NES12248635	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25401480 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	1107 bp downstream
Cpgi8755	CpG island 8755	1497 bp proximal
Rr370183	regulatory region 370183	1834 bp upstream
Rr523507	regulatory region 523507	794 bp proximal
Rr523508	regulatory region 523508	901 bp proximal
Rr523509	regulatory region 523509	1558 bp proximal
Tssr146818	transcription start site region 146818	1876 bp downstream
Tssr146819	transcription start site region 146819	1898 bp downstream