rs33777325 SNP Detail

Summary

• ID
  rs33777325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4294564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCCGGC AGGTGAAAAT
  AGCCATATTG GTGAGCTCTG ATCTGATGGA GAGACCCTCC CCTAGGAAAT GAGGTACAAT
  TGCTAAGAGG ATGAAGCCTG ATAAAAACCT CAGGTTTGCA CACACACACA CACACACACA
  CACACACACA CACACACACC CATGCAAACA AGAATAAACA TATACATTCA TACATATATT
  Y
  ATTCATTCAC TCAATATATA TATTCATGAG CTAAAGCTCT TCTTTTTATT GTGATTATTC
  CTTTACTTTG TGGTTAAATA TGTTCTTTCT TCATTAAGAA TAGAATGCTA TATGCCTTTT
  TTGTTTACAG ATGTGTTACA AACTCTTCTT TAATGGAAGT ACAATTAATG AAGTCATGTA
  AAGTAAAAAT TCAAAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47340708	NES11382325	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		C	T	C		T
ss324213465	CHEV_13_4243811	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33777325					SNP	T	T	T	T	T	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47340708	NES11382325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4294564 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	within coordinates
Gm61344	predicted gene, 61344	within coordinates
Rr474456	regulatory region 474456	393 bp proximal