rs33777355 SNP Detail

Summary

• ID
  rs33777355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25378923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATTCAT GAACCCTTCT
  CCCTACACTG TGCCTCAGGT ACTTACAGAC CCAGAGGAGT TGGAAGCAGG GCTGGGGTAT
  GGTTTGATGC CTTATAAACT TTGAAAAGGT GGTAAGGAGC CTCTGGAATC TTGTGGAGTA
  ATTGCTGCCA GGCAGAGGAG GCCTTCAGGG ATCTTGCAAG TAGAGCTTGC GTCCTGAGGT
  R
  GCCATCTAAC CAGAATATAT TAGGGACAGC CTGAGAGAAC CCCATTAGCA TTACACAGGT
  CCTTAGAGTC AGGCATGGAG GGGAAGAGAC AGCTCAGTAC CTTTGAAATG CTTGGTTTGG
  GAGTTTGAAT CTCTTCCCAT GCTGGGTAAA GTGGGCTAAA GGTGGCTGAT TACTTTGCAG
  GAGGCATCTC TTCCTCGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48356208	NES12249600	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33777355					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356208	NES12249600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25378923 () rs orientation: forward

Symbol	Name	Function Class
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	554 bp upstream
Tssr143140	transcription start site region 143140	250 bp downstream