rs33777387 SNP Detail

Summary

• ID
  rs33777387
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107354595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGCACT GGCATGTGTT
  CTACTTTTTC AAAGCGTGGC AGAGCCACCA CCCATTTGGG TTTCATCAGA GTAGGGTAGG
  ATATTGATAT GTCATTCCCA TTAATAGGTT CTGCCCAGAG GGGAAGGAAC TGGCTTCTGG
  GAACAAAGCA AGGCGGGCAA GAAGGGACTA GAAACCAGTC TTTCTAACAT ACAGCCTCCA
  W
  GTACTGTCCG CATATCCTAC ACTGGAAGGA TAATTCACTC CACAAACACT GGTGTTCACC
  AAGATCTTTA AACCGTGGGA CTTAAGTTGG TCTTAATATT TTGCCCTCCC AGAAGCTCAT
  CTTACACACA GTGAAGCTTG CACGATATAG CACAGACTCA GATTTCAAGG CCTATGGGAG
  CTCCCTTGGC TACGCGGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss46855707	NES10710880	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	T		A	A	A	T
ss135584113	ENSMUSSNP5646042	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs33777387					SNP	T	T	A	A	A	A	A	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855707	NES10710880	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107354595 () rs orientation: forward

Symbol	Name	Function Class
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	Intron
Rr582975	regulatory region 582975	83 bp distal