rs33778123 SNP Detail

Summary

• ID
  rs33778123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107465183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATGCAAT TAACATGATA
  AAATATAATT GTGTAATCAA AGCACACAAT CAGACGATTG TCATAATTAG AGGGGAAGAT
  GTTCTGAAAT GAGTGGGTTT GATGACTTGG GAAAGAAATG AATGTGCTCA GAGAATATGG
  ATGGTCATGG GTTCAGATCT CTCTCACGAA CACTGCAAAA GCTACTGGCA TCACTGGAGA
  Y
  CAGTGCAATG TCTGAGGGGC AGATAGGATG GGAGAGTCTC CCAGTGCTCC TGCGTGGGCT
  AACTGAACCT TGGTAATCAT AAAATTAGAC CTGTTGTCCA CCTGCTGGCC TGGGGCCTGC
  CTTTAATGGG TTAATCCTCA GATCCCATTT TTCACCGGTA GATGATAGGA GTTAGGATCA
  CTTCCCAGCA TCTTTCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857231	NES10705857	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33778123					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857231	NES10705857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107465183 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	92 bp downstream
Rr582999	regulatory region 582999	1209 bp proximal
Rr583000	regulatory region 583000	1464 bp proximal
Rr583001	regulatory region 583001	1472 bp proximal
Rr583002	regulatory region 583002	1788 bp proximal