rs33778154 SNP Detail

Summary

• ID
  rs33778154
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:4294879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTTTGT TTACAGATGT
  GTTACAAACT CTTCTTTAAT GGAAGTACAA TTAATGAAGT CATGTAAAGT AAAAATTCAA
  AAAACACTTA AGTAATTTTC TAAATGTCTA TGTGGTGTTG CCTGCAAGAA TACTTATATC
  CATGGATTTT CTCTGTCTTA TTTATGCTCA CCCTTTCTCA AATTATGTTG GAATATCAGT
  S
  TTGCTGAACA AAGTGACAAT CATTTTGATC TACCTTCTTG TATTTAAAAA TAGGACAAAT
  TACTTCAACA GTATGGATGT TTAAACAAGA CCTGGATAAG AGAACAGTAC CAAAAGTCAC
  TCCTACATGA TGGGCAGAGC TCTCATGAAG GGGCATCCTT AGACAGAGAG CTGGAGGCAA
  TTAACGTTTT CTAAGAGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47340717	NES11382328	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G		G	C	G	G		C
ss324213469	CHEV_13_4244126	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33778154					SNP	C	C	C	C	C	C	C	C	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47340717	NES11382328	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:4294879 () rs orientation: forward

Symbol	Name	Function Class
Akr1c19	aldo-keto reductase family 1, member C19	within coordinates
Gm61344	predicted gene, 61344	within coordinates
Rr474456	regulatory region 474456	78 bp proximal