rs33778725 SNP Detail

Summary

• ID
  rs33778725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107452384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAGCAG TAATATGTCT
  CAGCATTTCT CTCAGCCACA GTGATCCAAT GAAATGTCCA AGCCTGGATC CCTGACTCTA
  CCACTGACCT ATAACCCAAT TCTCCCTGCG GTATATTCAT TTGTGCTTAA CCTGGCCAGG
  GTGGGTTCTA TTACGTGTAA TAGAGACTCA TGTAGGCGAG AGGGAGAGAA CAAGAATTTT
  W
  AACTCTGCCT CACACTTTAG AACCTACAAA AACATTGACA TACCACATCT TGATGGGTTC
  CATTTACTAC CCATAAGAGT AGTGTTGAGT TTATCAGGAA GGAGTCCATG GGAGCACGTG
  ACCAAAGTCT CACAAGCAGC GAGCATCCCA AGTCAGAATC ATAAGCCCTC GGGTCCTGGA
  TTCCAAGCAA ACTCGGAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857033	NES10706281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33778725					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857033	NES10706281	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107452384 () rs orientation: forward

Symbol	Name	Function Class
Rr582995	regulatory region 582995	295 bp proximal
Rr582996	regulatory region 582996	1671 bp proximal