rs33778806 SNP Detail

Summary

• ID
  rs33778806
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107465278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTGATGA CTTGGGAAAG
  AAATGAATGT GCTCAGAGAA TATGGATGGT CATGGGTTCA GATCTCTCTC ACGAACACTG
  CAAAAGCTAC TGGCATCACT GGAGACCAGT GCAATGTCTG AGGGGCAGAT AGGATGGGAG
  AGTCTCCCAG TGCTCCTGCG TGGGCTAACT GAACCTTGGT AATCATAAAA TTAGACCTGT
  W
  GTCCACCTGC TGGCCTGGGG CCTGCCTTTA ATGGGTTAAT CCTCAGATCC CATTTTTCAC
  CGGTAGATGA TAGGAGTTAG GATCACTTCC CAGCATCTTT CTGAAGCTAA GGTGCGAACC
  CACAGCATCT GACCTGCAGA GATATTAAAT GTGGCATTCA ACTCACTACC AGAAATCGGA
  GTTCCTATTG TCACTCCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857234	NES10705858	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33778806					SNP	T	T	T	T	T	T	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857234	NES10705858	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107465278 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	within coordinates
Rr582999	regulatory region 582999	1114 bp proximal
Rr583000	regulatory region 583000	1369 bp proximal
Rr583001	regulatory region 583001	1377 bp proximal
Rr583002	regulatory region 583002	1693 bp proximal