rs33779093 SNP Detail

Summary

• ID
  rs33779093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTA GTTTTGTTGG GTTGTGTTAA
  R
  GTACTGTGTT AAAAAGTAAG GGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49529720	NES12826864	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	G	A	G	G		A	G	G	G		G
ss146140310	ENSMUSSNP2044652	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss320111996	CHEV_1_172575527	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33779093					SNP	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529720	NES12826864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472965 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	511 bp distal
Olfml2b	olfactomedin-like 2B	within coordinates
Rr423101	regulatory region 423101	854 bp distal
Rr423102	regulatory region 423102	1265 bp distal
Rr423103	regulatory region 423103	910 bp proximal
Tssr280	transcription start site region 280	1045 bp upstream
Tssr9928	transcription start site region 9928	938 bp downstream
Tssr9929	transcription start site region 9929	882 bp downstream
Tssr9930	transcription start site region 9930	826 bp downstream
Tssr9931	transcription start site region 9931	810 bp downstream
Tssr9932	transcription start site region 9932	794 bp downstream
Tssr9933	transcription start site region 9933	559 bp downstream
Tssr14922	transcription start site region 14922	1056 bp upstream
Tssr14923	transcription start site region 14923	1004 bp upstream