rs33779239 SNP Detail

Summary

• ID
  rs33779239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25517461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGACAT GTGTGGCCAC
  AACATGGCCC TCTGGAGTAC AGATGTTGCA TTCTGAGCCC ACATCCTGTG GAAGAAAGAT
  AAATGGGACC CTGGGGGCCT CAAGGGCAGA CAGAGAGTGG AGTACAACTG TTCCAATCCA
  TTAGCACCTC TGCCCTCAGG TCTCCTGGCT GCCGAAGTCA GTATTTGGGA CCAGAAATCT
  Y
  TGTGATATGT GCTTGGGGAT GCTCTGGCTC CTGTTCCTCA GTCTCCCCTG CCTGGGGAAC
  ACGATGCCTC TGACTCTTGG TGAGTTCTAA CTGGGATCCC TTATGTTGTC CCAGGCTCAG
  AGTCCTGCTC CAGATACTGT GGAGGTTATG CCAGTCTGTC GGTTTGCCAG AAATTTCACT
  GATGCCTGAG CCTTGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48355874	NES12244130	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33779239					SNP	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48355874	NES12244130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25517461 () rs orientation: forward

Symbol	Name	Function Class
Prss34	serine protease 34	within coordinates
Tssr143150	transcription start site region 143150	84 bp downstream