rs33779240 SNP Detail

Summary

• ID
  rs33779240
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25517178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTGCCTTG GGTGTGGGGC TGCGGACTAG TCTCTCCATC
  TTGTTTTTTT CTCTCTTTTT GAATATTCAG TTTGCGGCCT GACCCATCTA CCGCAGGGCA
  K
  GCTTTCAATA CCTGCACAGC CCGCTCTGCC TGCCTGGGAG GCAGTGAACT TGCCCTGACT
  GGTCAATTCA TATCTGCCCC AAGGAAAGAC ATGTGTGGCC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48355876	NES12244126	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33779240					SNP	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48355876	NES12244126	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25517178 () rs orientation: forward

Symbol	Name	Function Class
Prss34	serine protease 34	190 bp upstream
Tssr143150	transcription start site region 143150	185 bp upstream