rs33779525 SNP Detail

Summary

• ID
  rs33779525
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107465447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACCTTGG TAATCATAAA
  ATTAGACCTG TTGTCCACCT GCTGGCCTGG GGCCTGCCTT TAATGGGTTA ATCCTCAGAT
  CCCATTTTTC ACCGGTAGAT GATAGGAGTT AGGATCACTT CCCAGCATCT TTCTGAAGCT
  AAGGTGCGAA CCCACAGCAT CTGACCTGCA GAGATATTAA ATGTGGCATT CAACTCACTA
  M
  CAGAAATCGG AGTTCCTATT GTCACTCCTG TAACAGTGAG AAAGACCCCA CGGTACTTGA
  AAGCATGCCC ACAGTGACTC CCAGTCTGCT CCTACCTGTA TAGTCTTCTG CAGGCTGGTC
  CTAGCTCATA GGGGAAGATG GGGTGAGCAG GCAAGTTAGT GACAGCTGAG GGGCTCCAGA
  GTGCAGGAAA CTCAGGGTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46857243	NES10705861	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33779525					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857243	NES10705861	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107465447 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	within coordinates
Rr582999	regulatory region 582999	945 bp proximal
Rr583000	regulatory region 583000	1200 bp proximal
Rr583001	regulatory region 583001	1208 bp proximal
Rr583002	regulatory region 583002	1524 bp proximal