rs33779550 SNP Detail

Summary

• ID
  rs33779550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107453177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAATTTT AAGCAGCACC
  AGTGGCCTGA GGTGGTCTGG ATGAGAGGAA AGGCCCCAGG GGAACTCTGG GCCAGAACCC
  TGACCTCTTG GAGGGGCAAA GGCTTTGATC CCAGGGTTTG AGACTCTCAT AAATAATACT
  CCAAGCCCAG GTACCCTGGG GACCCATCCA AAGGCGGCTG GCTGAAAAGG TAGACCTGCC
  Y
  AGCCCCACGG CAGACCTGCC TCTGCTGCAG CAGGCCGTGA CAGGTTTACA GCCAGACTGC
  CTACAGTAGT TACCTCAGAT TTATCACCCT TCTTCAAGGG CAGTGGGAGC CGCCAAAGGC
  AACTTGGGGG CCCATAAATC ACCCTGATGG GAAATGCTGT CAGGAGGAGT GGAGGGCCAG
  ATAGGAGCCA TCTTGGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46857048	NES10706301	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C		C	C	C	C		C
ss320865738	CHEV_3_107348779	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33779550					SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857048	NES10706301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107453177 () rs orientation: forward

Symbol	Name	Function Class
Rr582995	regulatory region 582995	within coordinates
Rr582996	regulatory region 582996	878 bp proximal