rs33779894 SNP Detail

Summary

• ID
  rs33779894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGAAAGA TTTATGAGCA
  GCTGTTTTTC TCTGTATTTT TAGTGAAGTG GATGTTCACT TTTAGTTTAT CACACTATAT
  TGCTCGTTTG GTGTTGGACA GGCTTTCTCG TAGACCAGGC TGGCTTCCAG CTCACTTTAT
  AGCTGAGGCT AGTCTTGAAC TTCTGGTCCC TCTTACCTGC ACTAAGAGTG GAGATTCTAC
  M
  GCCCTGACTT TAGTTTTGTT GGGTTGTGTT AAAGTACTGT GTTAAAAAGT AAGGGCATGG
  GTCACAACTG TGGAGTGTTT CAGGCTTACC AAGTCAGGAG AAAGGAGAGG AAAGGAAAAT
  ACCACTGAGA AGAAAGGGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49529721	NES12826863	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33779894					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529721	NES12826863	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	478 bp distal
Olfml2b	olfactomedin-like 2B	within coordinates
Rr423101	regulatory region 423101	821 bp distal
Rr423102	regulatory region 423102	1232 bp distal
Rr423103	regulatory region 423103	943 bp proximal
Tssr280	transcription start site region 280	1012 bp upstream
Tssr9928	transcription start site region 9928	905 bp downstream
Tssr9929	transcription start site region 9929	849 bp downstream
Tssr9930	transcription start site region 9930	793 bp downstream
Tssr9931	transcription start site region 9931	777 bp downstream
Tssr9932	transcription start site region 9932	761 bp downstream
Tssr9933	transcription start site region 9933	526 bp downstream
Tssr14922	transcription start site region 14922	1023 bp upstream
Tssr14923	transcription start site region 14923	971 bp upstream