rs33779898 SNP Detail

Summary

• ID
  rs33779898
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTAAGC TGCTGGGGTC
  TGGGAGGAGA TGTTCAGGGT CTCTGGGGAG CACAGTCCTG CTCCACTCAG CCACACCCAG
  CTTTAGACGT TAGACGGTTC TCTGAACATC TACTCTTCCG GACTCCAGTG AAGCCGCCTT
  CCAGCCTGTC TTTGCTGAGA CCTCCGACCC AAGGTGGTCT CTGTAGGGAC TAAAGTCCCT
  W
  CTGTCGCATC TCTCATGGCC TATCCCCTGC CATTGGTTCT CTGCTTTGCT CTGGTGGTGG
  CACAGGTCTG GGGGTCCACT ACACCTCCCA CAGGGACAAG CGAGCCCCCT GATGTGCAAA
  CAGTGGAGCC CACGGAAGAT GACATTCTGC AAAACGAGGC GGACAACCAG GAGAACGTTT
  TATCTCAGGT AGGATGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49529725	NES12826945	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33779898					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529725	NES12826945	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472476 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	22 bp distal
Olfml2b	olfactomedin-like 2B	within coordinates
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	556 bp upstream
Tssr9928	transcription start site region 9928	449 bp downstream
Tssr9929	transcription start site region 9929	393 bp downstream
Tssr9930	transcription start site region 9930	337 bp downstream
Tssr9931	transcription start site region 9931	321 bp downstream
Tssr9932	transcription start site region 9932	305 bp downstream
Tssr9933	transcription start site region 9933	70 bp downstream
Tssr14922	transcription start site region 14922	567 bp upstream
Tssr14923	transcription start site region 14923	515 bp upstream