rs33779901 SNP Detail

Summary

• ID
  rs33779901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170472199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGTCCTCC TCCTCCGGGC
  CGTCACTGGC TGCATCTTTC TGCCCGGCAC AATAGAGGCT CCGCCCTCCC TCCGCGCCAG
  CCCCGCGGCG CCCTGGGCCA GCAGCCCTCC CTTGCCTCCT GCGCTGTGGC CACTGTCCAT
  CTTGCGCCCA GTCTCCGGGT GTCCCGAGTT TCCCGGCGCT AGCCTTCCAC CTGAGCTCAC
  R
  CTGCTGCGGC TTGCCCTCGT CGAGCCGGCG CCCTCCTCTG CTCCCTCAGT CACCTCTTTC
  TTGTGTCCTC TCTGCACAGT CTAAGCTGCT GGGGTCTGGG AGGAGATGTT CAGGGTCTCT
  GGGGAGCACA GTCCTGCTCC ACTCAGCCAC ACCCAGCTTT AGACGTTAGA CGGTTCTCTG
  AACATCTACT CTTCCGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49529729	NES12826931	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33779901					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49529729	NES12826931	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170472199 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	within coordinates
Olfml2b	olfactomedin-like 2B	within coordinates
Rr14047	regulatory region 14047	1999 bp distal
Rr28935	regulatory region 28935	within coordinates
Tssr280	transcription start site region 280	279 bp upstream
Tssr9927	transcription start site region 9927	1779 bp downstream
Tssr9928	transcription start site region 9928	172 bp downstream
Tssr9929	transcription start site region 9929	116 bp downstream
Tssr9930	transcription start site region 9930	60 bp downstream
Tssr9931	transcription start site region 9931	44 bp downstream
Tssr9932	transcription start site region 9932	28 bp downstream
Tssr9933	transcription start site region 9933	155 bp upstream
Tssr14922	transcription start site region 14922	290 bp upstream
Tssr14923	transcription start site region 14923	238 bp upstream