rs33780430 SNP Detail

Summary

• ID
  rs33780430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107466242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGAGAA CGCCATCCTC
  TTCCCCTCTC CTCCAAGTGG AAAACGTTCA TGATTGTCAG AGAAAGTGGG GTCCACCTGG
  GAAGCTATTT ATCCCAGGGT AGAGCTGAGA GTGTACTTCT TTCACTCCAG GCACTTCCTG
  CCTCCTCCAG CTCAGGGAAC CTTAGCACTC AGAAGCTCCA CCCACGTGTA AGGCCCAGGA
  R
  AGCCCAGTGC TACTAAGTCC TCCAAGACCC ACCCTCAGAC CTACCCTGCG CTGTCCTCTG
  TAGCTGTCTA GCTGTCACTA GGAGAGGTTC CTTGAGGCTG CTCTGCACTC CAGCCTAGGT
  CTGTATTAGG ACAGGCAGCT CTTCAGGGGA CTCTGTGAGC AAGGGGACTA TGGCAGATCT
  TATGAGAGAG ACTACAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46857258	NES10705683	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33780430					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46857258	NES10705683	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107466242 () rs orientation: forward

Symbol	Name	Function Class
Gm65374	predicted gene, 65374	within coordinates
Rr582999	regulatory region 582999	150 bp proximal
Rr583000	regulatory region 583000	405 bp proximal
Rr583001	regulatory region 583001	413 bp proximal
Rr583002	regulatory region 583002	729 bp proximal